GSM6373673: Mint-ChIP-seq from stimulated activated naive B cell (ENC... - SRA

SRX16500326: GSM6373673: Mint-ChIP-seq from stimulated activated naive B cell (ENCLB782YQZ); Homo sapiens; ChIP-Seq
12 ILLUMINA (NextSeq 500) runs: 19.9M spots, 2.7G bases, 970Mb downloads

Submitted by: NCBI (GEO)

Study: GSE59395: Genome-wide map of regulatory interactions in the human genome

PRJNA63443 • SRP012412 • All experiments • All runs

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Summary: We generated a genome-wide interaction map of regulatory elements in human cells (K562, GM12878) using Chromatin Interaction Analysis by Paired-End Tag sequencing (ChIA-PET) experiments targeting six broadly distributed factors. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf Overall Design: Chromatin interactions identified by ChIA-PET for 4 different histone modifications, RAD21 and RNAPII in K562 cell line, two biological replicates each.

Sample: ENCODE biosample ENCBS218KXX

SAMN29769688 • SRS14131736 • All experiments • All runs

Organism: Homo sapiens

Library:

Instrument: NextSeq 500

Strategy: ChIP-Seq

Source: GENOMIC

Selection: ChIP

Layout: PAIRED

Construction protocol: general protocol: https://www.encodeproject.org/documents/fc792518-31dc-4829-81d3-4dc9299c91bf/@@download/attachment/Bernstein-mint-chip3-a-low-input-chip-seq-protocol-using-multiplexed-chromatin-and-T7-amplificationn.pdf general protocol: https://www.encodeproject.org/documents/59eca314-f378-4bd8-a437-49f823e217be/@@download/attachment/MINT%20ChIP%20Protocol%20-%20Bernstein%20ENCODE.pdf

Experiment attributes:

GEO Accession: GSM6373673

Links:

NCBI link: NCBI Entrez (gds)

Runs: 12 runs, 19.9M spots, 2.7G bases, 970Mb

Run	# of Spots	# of Bases	Size	Published
SRR20476086	1,283,637	172M	63.7Mb	2022-07-25
SRR20476087	1,849,747	247.9M	90.9Mb	2022-07-26
SRR20476088	1,849,497	247.8M	91.7Mb	2022-07-26
SRR20476089	1,858,871	249.1M	91.6Mb	2022-07-26
SRR20476090	1,037,182	139M	52.4Mb	2022-07-26
SRR20476091	1,221,611	163.7M	61.3Mb	2022-07-26
SRR20476092	1,190,430	159.5M	60Mb	2022-07-26
SRR20476093	1,990,338	266.7M	93.7Mb	2022-07-26
SRR20476094	1,900,517	254.7M	89.4Mb	2022-07-25
SRR20476095	1,986,403	266.2M	94.4Mb	2022-07-26
SRR20476096	1,915,528	256.7M	91Mb	2022-07-26
SRR20476097	1,838,420	246.3M	89.9Mb	2022-07-26

ID:: 23229023

SRA

Sequence Read Archive

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